Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_9L0R_001GNRA
HL_9L0R_002GNRA with tandem sheared
HL_9L0R_003GNRA
HL_9L0R_004GNRA
HL_9L0R_005No text annotation
HL_9L0R_006GNRA
HL_9L0R_007tRNA anticodon loop
HL_9L0R_008GNRA
HL_9L0R_009GNRA
HL_9L0R_010No text annotation
HL_9L0R_011No text annotation
HL_9L0R_012No text annotation
HL_9L0R_013GNRA
HL_9L0R_014No text annotation
HL_9L0R_015GNRA
HL_9L0R_016No text annotation
HL_9L0R_017No text annotation
HL_9L0R_018GNRA
HL_9L0R_019GNRA with tandem sheared
HL_9L0R_020GNRA
HL_9L0R_021GNRA
HL_9L0R_022No text annotation
HL_9L0R_023GNRA
HL_9L0R_024tRNA anticodon loop
HL_9L0R_025GNRA
HL_9L0R_026GNRA
HL_9L0R_027No text annotation
HL_9L0R_028No text annotation
HL_9L0R_029No text annotation
HL_9L0R_030GNRA
HL_9L0R_031No text annotation
HL_9L0R_032GNRA
HL_9L0R_033No text annotation
HL_9L0R_034No text annotation
HL_9L0R_035GNRA
HL_9L0R_036GNRA with tandem sheared
HL_9L0R_037GNRA
HL_9L0R_038GNRA
HL_9L0R_039No text annotation
HL_9L0R_040GNRA
HL_9L0R_041tRNA anticodon loop
HL_9L0R_042GNRA
HL_9L0R_043GNRA
HL_9L0R_044No text annotation
HL_9L0R_045No text annotation
HL_9L0R_046No text annotation
HL_9L0R_047GNRA
HL_9L0R_048No text annotation
HL_9L0R_049GNRA
HL_9L0R_050No text annotation
HL_9L0R_051No text annotation
HL_9L0R_052GNRA
HL_9L0R_053GNRA with tandem sheared
HL_9L0R_054GNRA
HL_9L0R_055GNRA
HL_9L0R_056No text annotation
HL_9L0R_057GNRA
HL_9L0R_058tRNA anticodon loop
HL_9L0R_059GNRA
HL_9L0R_060GNRA
HL_9L0R_061No text annotation
HL_9L0R_062No text annotation
HL_9L0R_063No text annotation
HL_9L0R_064GNRA
HL_9L0R_065No text annotation
HL_9L0R_066GNRA
HL_9L0R_067No text annotation
HL_9L0R_068No text annotation
HL_9L0R_069GNRA
HL_9L0R_070GNRA with tandem sheared
HL_9L0R_071GNRA
HL_9L0R_072GNRA
HL_9L0R_073No text annotation
HL_9L0R_074GNRA
HL_9L0R_075tRNA anticodon loop
HL_9L0R_076GNRA
HL_9L0R_077GNRA
HL_9L0R_078No text annotation
HL_9L0R_079No text annotation
HL_9L0R_080No text annotation
HL_9L0R_081GNRA
HL_9L0R_082No text annotation
HL_9L0R_083GNRA
HL_9L0R_084No text annotation
HL_9L0R_085No text annotation
HL_9L0R_086GNRA
HL_9L0R_087GNRA with tandem sheared
HL_9L0R_088GNRA
HL_9L0R_089GNRA
HL_9L0R_090No text annotation
HL_9L0R_091GNRA
HL_9L0R_092tRNA anticodon loop
HL_9L0R_093GNRA
HL_9L0R_094GNRA
HL_9L0R_095No text annotation
HL_9L0R_096No text annotation
HL_9L0R_097No text annotation
HL_9L0R_098GNRA
HL_9L0R_099No text annotation
HL_9L0R_100GNRA
HL_9L0R_101No text annotation
HL_9L0R_102No text annotation
HL_9L0R_103GNRA
HL_9L0R_104GNRA with tandem sheared
HL_9L0R_105GNRA
HL_9L0R_106GNRA
HL_9L0R_107No text annotation
HL_9L0R_108GNRA
HL_9L0R_109tRNA anticodon loop
HL_9L0R_110GNRA
HL_9L0R_111GNRA
HL_9L0R_112No text annotation
HL_9L0R_113No text annotation
HL_9L0R_114No text annotation
HL_9L0R_115GNRA
HL_9L0R_116No text annotation
HL_9L0R_117GNRA
HL_9L0R_118No text annotation
HL_9L0R_119No text annotation
HL_9L0R_120GNRA
HL_9L0R_121GNRA with tandem sheared
HL_9L0R_122GNRA
HL_9L0R_123GNRA
HL_9L0R_124No text annotation
HL_9L0R_125GNRA
HL_9L0R_126tRNA anticodon loop
HL_9L0R_127GNRA
HL_9L0R_128GNRA
HL_9L0R_129No text annotation
HL_9L0R_130No text annotation
HL_9L0R_131No text annotation
HL_9L0R_132GNRA
HL_9L0R_133No text annotation
HL_9L0R_134GNRA
HL_9L0R_135No text annotation
HL_9L0R_136No text annotation
HL_9L0R_137GNRA
HL_9L0R_138GNRA with tandem sheared
HL_9L0R_139GNRA
HL_9L0R_140GNRA
HL_9L0R_141No text annotation
HL_9L0R_142GNRA
HL_9L0R_143tRNA anticodon loop
HL_9L0R_144GNRA
HL_9L0R_145GNRA
HL_9L0R_146No text annotation
HL_9L0R_147No text annotation
HL_9L0R_148No text annotation
HL_9L0R_149GNRA
HL_9L0R_150No text annotation
HL_9L0R_151GNRA
HL_9L0R_152No text annotation
HL_9L0R_153No text annotation
HL_9L0R_154GNRA
HL_9L0R_155GNRA with tandem sheared
HL_9L0R_156GNRA
HL_9L0R_157GNRA
HL_9L0R_158No text annotation
HL_9L0R_159GNRA
HL_9L0R_160tRNA anticodon loop
HL_9L0R_161GNRA
HL_9L0R_162GNRA
HL_9L0R_163No text annotation
HL_9L0R_164No text annotation
HL_9L0R_165No text annotation
HL_9L0R_166GNRA
HL_9L0R_167No text annotation
HL_9L0R_168GNRA
HL_9L0R_169No text annotation
HL_9L0R_170No text annotation
HL_9L0R_171GNRA
HL_9L0R_172GNRA with tandem sheared
HL_9L0R_173GNRA
HL_9L0R_174GNRA
HL_9L0R_175No text annotation
HL_9L0R_176GNRA
HL_9L0R_177tRNA anticodon loop
HL_9L0R_178GNRA
HL_9L0R_179GNRA
HL_9L0R_180No text annotation
HL_9L0R_181No text annotation
HL_9L0R_182No text annotation
HL_9L0R_183GNRA
HL_9L0R_184No text annotation
HL_9L0R_185GNRA
HL_9L0R_186No text annotation
HL_9L0R_187No text annotation
HL_9L0R_188GNRA
HL_9L0R_189GNRA with tandem sheared
HL_9L0R_190GNRA
HL_9L0R_191GNRA
HL_9L0R_192No text annotation
HL_9L0R_193GNRA
HL_9L0R_194tRNA anticodon loop
HL_9L0R_195GNRA
HL_9L0R_196GNRA
HL_9L0R_197No text annotation
HL_9L0R_198No text annotation
HL_9L0R_199No text annotation
HL_9L0R_200GNRA
HL_9L0R_201No text annotation
HL_9L0R_202GNRA
HL_9L0R_203No text annotation
HL_9L0R_204No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9L0R_0161/A/528:531,
1/A/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_0321/B/528:531,
1/B/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_0481/C/528:531,
1/C/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_0641/D/528:531,
1/D/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_0801/E/528:531,
1/E/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_0961/F/528:531,
1/F/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_1121/G/528:531,
1/G/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_1281/H/528:531,
1/H/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_1441/I/528:531,
1/I/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_1761/K/528:531,
1/K/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA
IL_9L0R_1921/L/528:531,
1/L/548:551
Tandem non-canonical cWW pairs
geometric
IL_8P9A_462
NA

Problematic loops

#loop idProblemSequence
IL_9L0R_001Isolated cWH basepair
IL_9L0R_002No text annotation
IL_9L0R_003No text annotation
IL_9L0R_004Minor groove platform
IL_9L0R_005No text annotation
IL_9L0R_006Isolated cWH basepair
IL_9L0R_007No text annotation
IL_9L0R_008No text annotation
IL_9L0R_009Tandem non-canonical cWW pairs
IL_9L0R_010No text annotation
IL_9L0R_011Major groove intercalation
IL_9L0R_012Isolated non-canonical cWW pair
IL_9L0R_013Double sheared
IL_9L0R_014No text annotation
IL_9L0R_015No text annotation
IL_9L0R_017Isolated cWH basepair
IL_9L0R_018No text annotation
IL_9L0R_019No text annotation
IL_9L0R_020Minor groove platform
IL_9L0R_021No text annotation
IL_9L0R_022Isolated cWH basepair
IL_9L0R_023No text annotation
IL_9L0R_024No text annotation
IL_9L0R_025Tandem non-canonical cWW pairs
IL_9L0R_026No text annotation
IL_9L0R_027Major groove intercalation
IL_9L0R_028Isolated non-canonical cWW pair
IL_9L0R_029Double sheared
IL_9L0R_030No text annotation
IL_9L0R_031No text annotation
IL_9L0R_033Isolated cWH basepair
IL_9L0R_034No text annotation
IL_9L0R_035No text annotation
IL_9L0R_036Minor groove platform
IL_9L0R_037No text annotation
IL_9L0R_038Isolated cWH basepair
IL_9L0R_039No text annotation
IL_9L0R_040No text annotation
IL_9L0R_041Tandem non-canonical cWW pairs
IL_9L0R_042No text annotation
IL_9L0R_043Major groove intercalation
IL_9L0R_044Isolated non-canonical cWW pair
IL_9L0R_045Double sheared
IL_9L0R_046No text annotation
IL_9L0R_047No text annotation
IL_9L0R_049Isolated cWH basepair
IL_9L0R_050No text annotation
IL_9L0R_051No text annotation
IL_9L0R_052Minor groove platform
IL_9L0R_053No text annotation
IL_9L0R_054Isolated cWH basepair
IL_9L0R_055No text annotation
IL_9L0R_056No text annotation
IL_9L0R_057Tandem non-canonical cWW pairs
IL_9L0R_058No text annotation
IL_9L0R_059Major groove intercalation
IL_9L0R_060Isolated non-canonical cWW pair
IL_9L0R_061Double sheared
IL_9L0R_062No text annotation
IL_9L0R_063No text annotation
IL_9L0R_065Isolated cWH basepair
IL_9L0R_066No text annotation
IL_9L0R_067No text annotation
IL_9L0R_068Minor groove platform
IL_9L0R_069No text annotation
IL_9L0R_070Isolated cWH basepair
IL_9L0R_071No text annotation
IL_9L0R_072No text annotation
IL_9L0R_073Tandem non-canonical cWW pairs
IL_9L0R_074No text annotation
IL_9L0R_075Major groove intercalation
IL_9L0R_076Isolated non-canonical cWW pair
IL_9L0R_077Double sheared
IL_9L0R_078No text annotation
IL_9L0R_079No text annotation
IL_9L0R_081Isolated cWH basepair
IL_9L0R_082No text annotation
IL_9L0R_083No text annotation
IL_9L0R_084Minor groove platform
IL_9L0R_085No text annotation
IL_9L0R_086Isolated cWH basepair
IL_9L0R_087No text annotation
IL_9L0R_088No text annotation
IL_9L0R_089Tandem non-canonical cWW pairs
IL_9L0R_090No text annotation
IL_9L0R_091Major groove intercalation
IL_9L0R_092Isolated non-canonical cWW pair
IL_9L0R_093Double sheared
IL_9L0R_094No text annotation
IL_9L0R_095No text annotation
IL_9L0R_097Isolated cWH basepair
IL_9L0R_098No text annotation
IL_9L0R_099No text annotation
IL_9L0R_100Minor groove platform
IL_9L0R_101No text annotation
IL_9L0R_102Isolated cWH basepair
IL_9L0R_103No text annotation
IL_9L0R_104No text annotation
IL_9L0R_105Tandem non-canonical cWW pairs
IL_9L0R_106No text annotation
IL_9L0R_107Major groove intercalation
IL_9L0R_108Isolated non-canonical cWW pair
IL_9L0R_109Double sheared
IL_9L0R_110No text annotation
IL_9L0R_111No text annotation
IL_9L0R_113Isolated cWH basepair
IL_9L0R_114No text annotation
IL_9L0R_115No text annotation
IL_9L0R_116Minor groove platform
IL_9L0R_117No text annotation
IL_9L0R_118Isolated cWH basepair
IL_9L0R_119No text annotation
IL_9L0R_120No text annotation
IL_9L0R_121Tandem non-canonical cWW pairs
IL_9L0R_122No text annotation
IL_9L0R_123Major groove intercalation
IL_9L0R_124Isolated non-canonical cWW pair
IL_9L0R_125Double sheared
IL_9L0R_126No text annotation
IL_9L0R_127No text annotation
IL_9L0R_129Isolated cWH basepair
IL_9L0R_130No text annotation
IL_9L0R_131No text annotation
IL_9L0R_132Minor groove platform
IL_9L0R_133No text annotation
IL_9L0R_134Isolated cWH basepair
IL_9L0R_135No text annotation
IL_9L0R_136No text annotation
IL_9L0R_137Tandem non-canonical cWW pairs
IL_9L0R_138No text annotation
IL_9L0R_139Major groove intercalation
IL_9L0R_140Isolated non-canonical cWW pair
IL_9L0R_141Double sheared
IL_9L0R_142No text annotation
IL_9L0R_143No text annotation
IL_9L0R_145Isolated cWH basepair
IL_9L0R_146No text annotation
IL_9L0R_147No text annotation
IL_9L0R_148Minor groove platform
IL_9L0R_149No text annotation
IL_9L0R_150Isolated cWH basepair
IL_9L0R_151No text annotation
IL_9L0R_152No text annotation
IL_9L0R_153Tandem non-canonical cWW pairs
IL_9L0R_154No text annotation
IL_9L0R_155Major groove intercalation
IL_9L0R_156Isolated non-canonical cWW pair
IL_9L0R_157Double sheared
IL_9L0R_158No text annotation
IL_9L0R_159No text annotation
IL_9L0R_160Tandem non-canonical cWW pairs
IL_9L0R_161Isolated cWH basepair
IL_9L0R_162No text annotation
IL_9L0R_163No text annotation
IL_9L0R_164Minor groove platform
IL_9L0R_165No text annotation
IL_9L0R_166Isolated cWH basepair
IL_9L0R_167No text annotation
IL_9L0R_168No text annotation
IL_9L0R_169Tandem non-canonical cWW pairs
IL_9L0R_170No text annotation
IL_9L0R_171Major groove intercalation
IL_9L0R_172Isolated non-canonical cWW pair
IL_9L0R_173Double sheared
IL_9L0R_174No text annotation
IL_9L0R_175No text annotation
IL_9L0R_177Isolated cWH basepair
IL_9L0R_178No text annotation
IL_9L0R_179No text annotation
IL_9L0R_180Minor groove platform
IL_9L0R_181No text annotation
IL_9L0R_182Isolated cWH basepair
IL_9L0R_183No text annotation
IL_9L0R_184No text annotation
IL_9L0R_185Tandem non-canonical cWW pairs
IL_9L0R_186No text annotation
IL_9L0R_187Major groove intercalation
IL_9L0R_188Isolated non-canonical cWW pair
IL_9L0R_189Double sheared
IL_9L0R_190No text annotation
IL_9L0R_191No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J4_9L0R_0021/A/453:467,
1/A/481:482,
1/A/508:510,
1/A/568:574
No text annotation
J4_9L0R_0241/L/453:467,
1/L/481:482,
1/L/508:510,
1/L/568:574
No text annotation

Problematic loops

#loop idProblemSequence
J3_9L0R_001No text annotation
J3_9L0R_002No text annotation
J3_9L0R_003No text annotation
J3_9L0R_004No text annotation
J3_9L0R_005No text annotation
J3_9L0R_006No text annotation
J3_9L0R_007No text annotation
J3_9L0R_008No text annotation
J3_9L0R_009No text annotation
J3_9L0R_010No text annotation
J3_9L0R_011No text annotation
J3_9L0R_012No text annotation
J3_9L0R_013No text annotation
J3_9L0R_014No text annotation
J3_9L0R_015No text annotation
J3_9L0R_016No text annotation
J3_9L0R_017No text annotation
J3_9L0R_018No text annotation
J3_9L0R_019No text annotation
J3_9L0R_020No text annotation
J3_9L0R_021No text annotation
J3_9L0R_022No text annotation
J3_9L0R_023No text annotation
J3_9L0R_024No text annotation
J3_9L0R_025No text annotation
J3_9L0R_026No text annotation
J3_9L0R_027No text annotation
J3_9L0R_028No text annotation
J3_9L0R_029No text annotation
J3_9L0R_030No text annotation
J3_9L0R_031No text annotation
J3_9L0R_032No text annotation
J3_9L0R_033No text annotation
J3_9L0R_034No text annotation
J3_9L0R_035No text annotation
J3_9L0R_036No text annotation
J4_9L0R_001No text annotation
J4_9L0R_003No text annotation
J4_9L0R_004No text annotation
J4_9L0R_005No text annotation
J4_9L0R_006No text annotation
J4_9L0R_007No text annotation
J4_9L0R_008No text annotation
J4_9L0R_009No text annotation
J4_9L0R_010No text annotation
J4_9L0R_011No text annotation
J4_9L0R_012No text annotation
J4_9L0R_013No text annotation
J4_9L0R_014No text annotation
J4_9L0R_015No text annotation
J4_9L0R_016No text annotation
J4_9L0R_017No text annotation
J4_9L0R_018No text annotation
J4_9L0R_019No text annotation
J4_9L0R_020No text annotation
J4_9L0R_021No text annotation
J4_9L0R_022No text annotation
J4_9L0R_023No text annotation

Coloring options:
Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.0445 s